PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G070800.1
Common NamePHAVU_009G070800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 244aa    MW: 25979.1 Da    PI: 8.4987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G070800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018100122123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k Fs+   L  H  +H
  Phvul.009G070800.1 100 YKCSVCNKAFSSYQALGGHKASH 122
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-1399124IPR007087Zinc finger, C2H2
SuperFamilySSF576674.22E-1099173No hitNo description
SMARTSM003550.0067100122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
PfamPF139122.1E-13150175IPR007087Zinc finger, C2H2
SMARTSM003550.18151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328151173IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALEALQSPT TANPSFSPFE EANLSYLDTP WAKRKRSKRA RMDQQLQLQH PSCTEEEYLA  60
LCLIMLARGG SHAAPAIPTT SKPALSDNNS APLSAAKLTY KCSVCNKAFS SYQALGGHKA  120
SHRKLAGAAE DQPASSSVTT TSASNGGGRT HECSICHKTF PTGQALGGHK RCHYEGGGGN  180
SAVTASEGVG STHTGSHRDF DLNLPAFPDF PTRFFADEEV SSPHPSKKPR LHLTIPKIEI  240
PQH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136747.10.0hypothetical protein PHAVU_009G070800g
SwissprotQ962891e-64ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLV7AWZ30.0V7AWZ3_PHAVU; Uncharacterized protein
STRINGGLYMA06G04840.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-65salt tolerance zinc finger